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  5. Sopen02g023180

Sopen02g023180


Description : PPR repeat


Gene families : OG_42_0000146 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000146_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g023180
Cluster HCCA clusters: Cluster_216

Target Alias Description ECC score Gene Family Method Actions
420699 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
421992 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
428276 No alias PENTATRICOPEPTIDE REPEAT 596 0.04 Orthogroups_2024-Update
55637 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g16227 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.02G000600 No alias PENTATRICOPEPTIDE REPEAT 596 0.02 Orthogroups_2024-Update
Glyma.07G119200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.10G000600 No alias PENTATRICOPEPTIDE REPEAT 596 0.02 Orthogroups_2024-Update
Glyma.10G026151 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.13G297800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G093220.6 No alias splicing factor *(CRR16) 0.02 Orthogroups_2024-Update
HORVU2Hr1G120330.3 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os04g25410 No alias pentatricopeptide repeat domain containing protein,... 0.02 Orthogroups_2024-Update
LOC_Os12g07260 No alias PPR repeat domain containing protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g34340 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
MA_10435629g0010 No alias (at1g60770 : 266.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_29806g0010 No alias (at1g60770 : 282.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00039610-RA No alias (at5g39710 : 272.0) EMBRYO DEFECTIVE 2745 (EMB2745);... 0.03 Orthogroups_2024-Update
PSME_00052183-RA No alias (at1g02150 : 315.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
Potri.003G193600 No alias PENTATRICOPEPTIDE REPEAT 596 0.03 Orthogroups_2024-Update
Sobic.010G252100.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 317 342
IPR002885 Pentatricopeptide_repeat 139 168
IPR002885 Pentatricopeptide_repeat 354 379
IPR002885 Pentatricopeptide_repeat 172 218
No external refs found!