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  5. Sopen02g024080

Sopen02g024080


Description : PPR repeat family


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g024080
Cluster HCCA clusters: Cluster_264

Target Alias Description ECC score Gene Family Method Actions
34785 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
90480 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
A4A49_12441 No alias pentatricopeptide repeat-containing protein 0.03 Orthogroups_2024-Update
At3g15930 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Orthogroups_2024-Update
At5g52630 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Orthogroups_2024-Update
At5g59200 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Orthogroups_2024-Update
Glyma.03G108500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.11G069901 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
MA_25584g0010 No alias (at4g18750 : 529.0) Encodes a pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
MA_89214g0010 No alias (at1g11290 : 690.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00017651-RA No alias (at4g13650 : 592.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
Potri.006G076100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Pp1s178_15V6 No alias T1B8.1; pentatricopeptide (PPR) repeat-containing... 0.03 Orthogroups_2024-Update
Pp1s186_64V6 No alias hypothetical protein [Oryza sativa (japonica cultivar-group)] 0.03 Orthogroups_2024-Update
Seita.4G008500.1 No alias RNA editing factor *(CRR22) 0.03 Orthogroups_2024-Update
Sobic.005G020000.7 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 141 187
IPR002885 Pentatricopeptide_repeat 749 797
IPR002885 Pentatricopeptide_repeat 548 595
IPR002885 Pentatricopeptide_repeat 346 393
IPR002885 Pentatricopeptide_repeat 245 290
IPR002885 Pentatricopeptide_repeat 447 493
IPR032867 DYW_dom 923 1046
IPR002885 Pentatricopeptide_repeat 623 648
IPR002885 Pentatricopeptide_repeat 219 242
IPR002885 Pentatricopeptide_repeat 651 681
IPR002885 Pentatricopeptide_repeat 320 345
No external refs found!