Sopen02g024250

Description : Reverse transcriptase (RNA-dependent DNA polymerase)

Gene families : OG_42_0000069 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000069_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen02g024250
Cluster	HCCA clusters: Cluster_371

Target	Alias	Description	ECC score	Gene Family Method
A4A49_43067	No alias	reticuline oxidase-like protein	0.02	Orthogroups_2024-Update
Brara.I02786.1	No alias	EC_1.1 oxidoreductase acting on CH-OH group of donor	0.02	Orthogroups_2024-Update
Glyma.08G059000	No alias	FAD-binding Berberine family protein	0.03	Orthogroups_2024-Update
Glyma.09G028300	No alias	FAD-binding Berberine family protein	0.03	Orthogroups_2024-Update
Glyma.15G133200	No alias	FAD-binding Berberine family protein	0.03	Orthogroups_2024-Update
HORVU7Hr1G026630.1	No alias	EC_1.1 oxidoreductase acting on CH-OH group of donor	0.02	Orthogroups_2024-Update
Potri.001G462200	No alias	FAD-binding Berberine family protein	0.03	Orthogroups_2024-Update
Solyc06g065060	No alias	FAD-binding Berberine family protein (AHRD V3.3 ***...	0.02	Orthogroups_2024-Update
Solyc10g054460	No alias	FAD-binding Berberine family protein, putative (AHRD...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	InterProScan predictions
MF	GO:0016491	oxidoreductase activity	IEA	InterProScan predictions
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0048037	cofactor binding	None	Extended
MF	GO:0050660	flavin adenine dinucleotide binding	IEA	InterProScan predictions
MF	GO:0050662	coenzyme binding	None	Extended
BP	GO:0055114	oxidation-reduction process	IEA	InterProScan predictions
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001584	Integrase_cat-core	503	584
IPR013103	RVT_2	791	1032
IPR006094	Oxid_FAD_bind_N	70	206

External Links

No external refs found!

Sopen02g024250

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation