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  5. Sopen02g025020

Sopen02g025020


Description : RNA pseudouridylate synthase


Gene families : OG_42_0005179 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005179_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g025020
Cluster HCCA clusters: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
Bradi1g18900 No alias Pseudouridine synthase family protein 0.04 Orthogroups_2024-Update
Brara.K01019.1 No alias plastidial RNA pseudouridine synthase *(PUS6) 0.03 Orthogroups_2024-Update
Potri.004G019100 No alias Pseudouridine synthase family protein 0.06 Orthogroups_2024-Update
Seita.2G419700.1 No alias plastidial RNA pseudouridine synthase *(PUS6) 0.07 Orthogroups_2024-Update
Sobic.002G404900.1 No alias plastidial RNA pseudouridine synthase *(PUS6) 0.05 Orthogroups_2024-Update
Solyc02g080320 No alias Pseudouridine synthase family protein (AHRD V3.3 *** AT4G21770.1) 0.12 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA InterProScan predictions
MF GO:0003723 RNA binding IEA InterProScan predictions
BP GO:0009451 RNA modification IEA InterProScan predictions
MF GO:0009982 pseudouridine synthase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR006145 PsdUridine_synth_RsuA/RluD 231 400
No external refs found!