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  5. Sopen02g025110

Sopen02g025110


Description : RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Gene families : OG_42_0000344 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000344_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Solanum release: Sopen02g025110
Cluster HCCA clusters: Cluster_171

Target Alias Description ECC score Gene Family Method Actions
232989 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
Bradi3g46470 No alias RNA-binding protein 47C 0.02 Orthogroups_2024-Update
Brara.E02288.1 No alias regulatory factor *(RBP45/47) of mRNA stress granule formation 0.03 Orthogroups_2024-Update
Glyma.07G259500 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Glyma.13G340200 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
HORVU7Hr1G066510.3 No alias regulatory factor *(RBP45/47) of mRNA stress granule formation 0.03 Orthogroups_2024-Update
LOC_Os07g33330 No alias RNA recognition motif containing protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_29443g0010 No alias (at4g27000 : 346.0) ATRBP45C; CONTAINS InterPro... 0.02 Orthogroups_2024-Update
Pp1s391_69V6 No alias nuclear acid binding 0.02 Orthogroups_2024-Update
Seita.9G183600.1 No alias regulatory factor *(RBP45/47) of mRNA stress granule formation 0.03 Orthogroups_2024-Update
Solyc02g080420 No alias RNA-binding family protein (AHRD V3.3 *** A0A061FD24_THECC) 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000504 RRM_dom 81 146
IPR000504 RRM_dom 174 243
IPR000504 RRM_dom 280 344
No external refs found!