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  5. Sopen02g025270

Sopen02g025270


Description : Carbohydrate binding domain (family 25)


Gene families : OG_42_0001050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001050_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Solanum release: Sopen02g025270
Cluster HCCA clusters: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G121612 No alias starch synthase 3 0.03 Orthogroups_2024-Update
Glyma.07G260500 No alias starch synthase 3 0.03 Orthogroups_2024-Update
LOC_Os04g53310 No alias soluble starch synthase 3, chloroplast precursor,... 0.03 Orthogroups_2024-Update
Pp1s2_195V6 No alias soluble starch synthase iv-2 0.02 Orthogroups_2024-Update
Pp1s302_51V6 No alias soluble starch synthase iv-1 0.02 Orthogroups_2024-Update
Sobic.006G221000.1 No alias starch synthase *(SS3) 0.06 Orthogroups_2024-Update
Solyc02g080570 No alias Soluble starch synthase 3, chloroplastic/amyloplastic... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:2001070 starch binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001296 Glyco_trans_1 1021 1148
IPR005085 CBM25 356 423
IPR005085 CBM25 517 603
IPR005085 CBM25 679 764
IPR013534 Starch_synth_cat_dom 775 963
No external refs found!