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  5. Sopen02g025600

Sopen02g025600


Description : Pectate lyase


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g025600
Cluster HCCA clusters: Cluster_333

Target Alias Description ECC score Gene Family Method Actions
A4A49_12542 No alias pectate lyase 0.02 Orthogroups_2024-Update
A4A49_40716 No alias putative pectate lyase 16 0.04 Orthogroups_2024-Update
Brara.B01305.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.04 Orthogroups_2024-Update
Brara.D00702.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
Brara.F00890.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Glyma.06G174700 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G296900 No alias Pectate lyase family protein 0.02 Orthogroups_2024-Update
HORVU3Hr1G075970.2 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
MA_10335560g0010 No alias (at4g13210 : 131.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
MA_10353668g0010 No alias (at4g24780 : 563.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00020308-RA No alias (at4g13710 : 598.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00023843-RA No alias (at4g13710 : 610.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
Potri.005G064500 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.006G122000 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Solyc02g067450 No alias Pectate lyase (AHRD V3.3 *** M1A9L8_SOLTU) 0.02 Orthogroups_2024-Update
Solyc03g058890 No alias Pectate lyase (AHRD V3.3 *** K4BGT7_SOLLC) 0.03 Orthogroups_2024-Update
Solyc06g071020 No alias Pectate lyase (AHRD V3.3 *** K4C8H5_SOLLC) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002022 Pec_lyase 136 319
No external refs found!