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  5. Sopen02g026410

Sopen02g026410


Description : DKCLD (NUC011) domain


Gene families : OG_42_0004273 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004273_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g026410
Cluster HCCA clusters: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
81986 No alias homologue of NAP57 0.02 Orthogroups_2024-Update
A4A49_39430 No alias haca ribonucleoprotein complex subunit 4 0.03 Orthogroups_2024-Update
At3g57150 No alias Uncharacterized protein At3g57150 (Fragment)... 0.05 Orthogroups_2024-Update
Bradi2g04950 No alias homologue of NAP57 0.1 Orthogroups_2024-Update
Bradi4g38770 No alias homologue of NAP57 0.06 Orthogroups_2024-Update
Brara.B02681.1 No alias pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.05 Orthogroups_2024-Update
Brara.G01728.1 No alias pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.12 Orthogroups_2024-Update
Cre03.g172950 No alias homologue of NAP57 0.06 Orthogroups_2024-Update
GRMZM2G044128 No alias homologue of NAP57 0.02 Orthogroups_2024-Update
GRMZM2G172956 No alias homologue of NAP57 0.06 Orthogroups_2024-Update
Glyma.08G176900 No alias homologue of NAP57 0.05 Orthogroups_2024-Update
Glyma.15G056100 No alias homologue of NAP57 0.09 Orthogroups_2024-Update
HORVU2Hr1G027370.1 No alias pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.04 Orthogroups_2024-Update
HORVU2Hr1G027400.5 No alias pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.06 Orthogroups_2024-Update
Kfl00043_0130 kfl00043_0130_v1.1 (at3g57150 : 649.0) Encodes a putative pseudouridine... 0.02 Orthogroups_2024-Update
LOC_Os03g25450 No alias h/ACA ribonucleoprotein complex subunit 4, putative, expressed 0.06 Orthogroups_2024-Update
LOC_Os07g44190 No alias h/ACA ribonucleoprotein complex subunit 4, putative, expressed 0.03 Orthogroups_2024-Update
MA_27456g0030 No alias (at3g57150 : 683.0) Encodes a putative pseudouridine... 0.03 Orthogroups_2024-Update
Mp4g12650.1 No alias pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.02 Orthogroups_2024-Update
Potri.006G044100 No alias homologue of NAP57 0.04 Orthogroups_2024-Update
Potri.016G041200 No alias homologue of NAP57 0.08 Orthogroups_2024-Update
Seita.2G404800.1 No alias pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.11 Orthogroups_2024-Update
Seita.5G057000.1 No alias pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.1 Orthogroups_2024-Update
Sobic.002G389500.1 No alias pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.07 Orthogroups_2024-Update
Sobic.003G117100.1 No alias pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.09 Orthogroups_2024-Update
Solyc02g081810 No alias H/ACA ribonucleoprotein complex subunit 4 (AHRD V3.3 ***... 0.21 Orthogroups_2024-Update
evm.model.contig_497.4 No alias (at3g57150 : 559.0) Encodes a putative pseudouridine... 0.02 Orthogroups_2024-Update
evm.model.tig00000553.10 No alias (at3g57150 : 635.0) Encodes a putative pseudouridine... 0.11 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
BP GO:0006396 RNA processing IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032819 TruB_C 227 293
IPR002478 PUA 297 369
IPR002501 PsdUridine_synth_N 110 226
IPR012960 Dyskerin-like 49 106
No external refs found!