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  5. Sopen02g026570

Sopen02g026570


Description : RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Gene families : OG_42_0005036 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005036_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g026570
Cluster HCCA clusters: Cluster_147

Target Alias Description ECC score Gene Family Method Actions
Bradi5g21380 No alias nucleotide binding;nucleic acid binding;RNA binding 0.06 Orthogroups_2024-Update
Brara.A01051.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Cre16.g685200 No alias nucleotide binding;nucleic acid binding;RNA binding 0.04 Orthogroups_2024-Update
Glyma.14G154500 No alias nucleotide binding;nucleic acid binding;RNA binding 0.03 Orthogroups_2024-Update
PSME_00000519-RA No alias (at4g19610 : 88.6) nucleotide binding;nucleic acid... 0.02 Orthogroups_2024-Update
Pp1s42_20V6 No alias F24J7.162; RNA recognition motif (RRM)-containing... 0.02 Orthogroups_2024-Update
Solyc02g081940 No alias RNA binding protein (AHRD V3.3 *** A0A0K9P1B7_ZOSMR) 0.04 Orthogroups_2024-Update
evm.model.tig00000893.5 No alias (at4g19610 : 150.0) nucleotide binding;nucleic acid... 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000504 RRM_dom 270 340
IPR000504 RRM_dom 583 657
IPR000504 RRM_dom 466 529
IPR000504 RRM_dom 682 749
No external refs found!