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  5. Solyc02g005280

Solyc02g005280


Description : Pentatricopeptide repeat superfamily protein, putative (AHRD V3.3 *** A0A061E854_THECC)


Gene families : OG_42_0014728 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0014728_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc02g005280
Cluster HCCA clusters: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
Sopen02g001320 No alias PPR repeat family 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004129 cytochrome-c oxidase activity IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
CC GO:0005739 mitochondrion IEP Predicted GO
MF GO:0015002 heme-copper terminal oxidase activity IEP Predicted GO
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Predicted GO
MF GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 370 418
IPR002885 Pentatricopeptide_repeat 269 315
IPR002885 Pentatricopeptide_repeat 345 369
IPR002885 Pentatricopeptide_repeat 142 166
IPR002885 Pentatricopeptide_repeat 445 470
IPR002885 Pentatricopeptide_repeat 171 198
No external refs found!