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  5. Sopen02g027450

Sopen02g027450


Description : HMG (high mobility group) box


Gene families : OG_42_0000453 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000453_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g027450
Cluster HCCA clusters: Cluster_159

Target Alias Description ECC score Gene Family Method Actions
At1g20693 No alias High mobility group B protein 2... 0.03 Orthogroups_2024-Update
At1g20696 No alias high mobility group B3 [Source:TAIR;Acc:AT1G20696] 0.03 Orthogroups_2024-Update
At5g23405 No alias High mobility group B protein 12... 0.03 Orthogroups_2024-Update
Brara.F01474.1 No alias DNA bending architectural protein *(HMG-B) 0.03 Orthogroups_2024-Update
Brara.F02583.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Cre06.g261450 No alias high mobility group 0.02 Orthogroups_2024-Update
Cre11.g480950 No alias high mobility group B3 0.02 Orthogroups_2024-Update
GRMZM5G834758 No alias high mobility group B3 0.02 Orthogroups_2024-Update
Glyma.16G116300 No alias high mobility group B2 0.03 Orthogroups_2024-Update
Glyma.20G100600 No alias high-mobility group box 6 0.04 Orthogroups_2024-Update
MA_86565g0010 No alias (at5g23420 : 100.0) Encodes HMGB6, a protein belonging... 0.04 Orthogroups_2024-Update
Potri.010G189900 No alias high mobility group B1 0.04 Orthogroups_2024-Update
Solyc02g082700 No alias High mobility group protein (AHRD V3.3 *** O49948_SOLTU) 0.07 Orthogroups_2024-Update
Solyc04g008820 No alias High mobility group protein (AHRD V3.3 *-* O49948_SOLTU) 0.05 Orthogroups_2024-Update
evm.model.tig00001234.9 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 36 105
No external refs found!