Sopen02g028130

Description : RNA polymerase Rpb1, domain 1

Gene families : OG_42_0001434 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001434_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen02g028130
Cluster	HCCA clusters: Cluster_88

Target	Alias	Description	ECC score	Gene Family Method
Brara.B01049.1	No alias	component *(NRPC1) of RNA polymerase III complex	0.02	Orthogroups_2024-Update
Brara.H01626.1	No alias	component *(NRPB1) of RNA polymerase II complex	0.03	Orthogroups_2024-Update
Kfl00243_0080	kfl00243_0080_v1.1	(at5g60040 : 1445.0) Encodes a subunit of RNA polymerase...	0.02	Orthogroups_2024-Update
Potri.001G341900	No alias	nuclear RNA polymerase C1	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0000428	DNA-directed RNA polymerase complex	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005665	RNA polymerase II, core complex	IEA	InterProScan predictions
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0006366	transcription by RNA polymerase II	IEA	InterProScan predictions
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
CC	GO:0030880	RNA polymerase complex	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044428	nuclear part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044451	nucleoplasm part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	None	Extended
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000684	RNA_pol_II_repeat_euk	1605	1618
IPR000684	RNA_pol_II_repeat_euk	1612	1625
IPR000684	RNA_pol_II_repeat_euk	1647	1660
IPR000684	RNA_pol_II_repeat_euk	1724	1737
IPR000684	RNA_pol_II_repeat_euk	1668	1681
IPR000684	RNA_pol_II_repeat_euk	1577	1590
IPR000684	RNA_pol_II_repeat_euk	1598	1611
IPR000684	RNA_pol_II_repeat_euk	1640	1653
IPR000684	RNA_pol_II_repeat_euk	1570	1583
IPR000684	RNA_pol_II_repeat_euk	1549	1562
IPR000684	RNA_pol_II_repeat_euk	1710	1723
IPR000684	RNA_pol_II_repeat_euk	1661	1674
IPR000684	RNA_pol_II_repeat_euk	1777	1790
IPR000684	RNA_pol_II_repeat_euk	1633	1646
IPR000684	RNA_pol_II_repeat_euk	1563	1576
IPR000684	RNA_pol_II_repeat_euk	1703	1716
IPR000684	RNA_pol_II_repeat_euk	1696	1709
IPR000684	RNA_pol_II_repeat_euk	1584	1597
IPR000684	RNA_pol_II_repeat_euk	1689	1702
IPR000684	RNA_pol_II_repeat_euk	1675	1688
IPR000684	RNA_pol_II_repeat_euk	1591	1604
IPR000684	RNA_pol_II_repeat_euk	1750	1761
IPR000684	RNA_pol_II_repeat_euk	1682	1695
IPR000684	RNA_pol_II_repeat_euk	1626	1639
IPR000684	RNA_pol_II_repeat_euk	1556	1569
IPR000684	RNA_pol_II_repeat_euk	1541	1555
IPR000684	RNA_pol_II_repeat_euk	1619	1632
IPR000684	RNA_pol_II_repeat_euk	1717	1730
IPR000684	RNA_pol_II_repeat_euk	1654	1667
IPR007073	RNA_pol_Rpb1_7	1165	1298
IPR000722	RNA_pol_asu	352	520
IPR007080	RNA_pol_Rpb1_1	14	350
IPR007075	RNA_pol_Rpb1_6	896	1080
IPR007066	RNA_pol_Rpb1_3	524	692
IPR007083	RNA_pol_Rpb1_4	720	823
IPR007081	RNA_pol_Rpb1_5	830	1419

External Links

No external refs found!

Sopen02g028130

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation