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  5. Sopen02g029890

Sopen02g029890


Description : GATA zinc finger


Gene families : OG_42_0000071 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g029890
Cluster HCCA clusters: Cluster_381

Target Alias Description ECC score Gene Family Method Actions
Bradi2g62660 No alias GATA transcription factor 17 0.02 Orthogroups_2024-Update
GRMZM2G101058 No alias GATA transcription factor 4 0.04 Orthogroups_2024-Update
PSME_00054096-RA No alias (at5g25830 : 199.0) Encodes a member of the GATA factor... 0.04 Orthogroups_2024-Update
Potri.003G213300 No alias GATA transcription factor 29 0.02 Orthogroups_2024-Update
Potri.019G033000 No alias GATA transcription factor 9 0.02 Orthogroups_2024-Update
Seita.7G267900.1 No alias transcription factor *(A/B-GATA) 0.03 Orthogroups_2024-Update
Seita.9G025200.1 No alias transcription factor *(A/B-GATA) 0.02 Orthogroups_2024-Update
Solyc04g015360 No alias GATA transcription factor (AHRD V3.3 *** K4BQ39_SOLLC) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
MF GO:0043565 sequence-specific DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000679 Znf_GATA 125 159
No external refs found!