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  5. Sopen02g030530

Sopen02g030530


Description : UBA/TS-N domain


Gene families : OG_42_0001189 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001189_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g030530
Cluster HCCA clusters: Cluster_256

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G035417 No alias Rad23 UV excision repair protein family 0.02 Orthogroups_2024-Update
GRMZM2G143462 No alias Rad23 UV excision repair protein family 0.02 Orthogroups_2024-Update
Glyma.08G223800 No alias Rad23 UV excision repair protein family 0.02 Orthogroups_2024-Update
Glyma.18G297400 No alias Rad23 UV excision repair protein family 0.03 Orthogroups_2024-Update
Kfl00591_0100 kfl00591_0100_v1.... (at5g38470 : 240.0) Encodes a member of the RADIATION... 0.02 Orthogroups_2024-Update
PSME_00027719-RA No alias (at5g38470 : 294.0) Encodes a member of the RADIATION... 0.03 Orthogroups_2024-Update
Pp1s3_98V6 No alias No description available 0.02 Orthogroups_2024-Update
Pp1s58_148V6 No alias rad23 damaged dna binding 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
BP GO:0006289 nucleotide-excision repair IEA InterProScan predictions
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 3 76
IPR015360 XPC-bd 265 320
IPR015940 UBA 345 380
IPR015940 UBA 155 193
No external refs found!