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  5. Sopen02g030880

Sopen02g030880


Description : CRS1 / YhbY (CRM) domain


Gene families : OG_42_0000921 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000921_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g030880
Cluster HCCA clusters: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
120007 No alias CRS1 / YhbY (CRM) domain-containing protein 0.02 Orthogroups_2024-Update
20706 No alias CRS1 / YhbY (CRM) domain-containing protein 0.02 Orthogroups_2024-Update
412905 No alias CRS1 / YhbY (CRM) domain-containing protein 0.02 Orthogroups_2024-Update
A4A49_40262 No alias crm-domain containing factor cfm2, chloroplastic 0.02 Orthogroups_2024-Update
At3g18390 No alias CRS1 / YhbY (CRM) domain-containing protein... 0.02 Orthogroups_2024-Update
Bradi2g17390 No alias CRS1 / YhbY (CRM) domain-containing protein 0.02 Orthogroups_2024-Update
Brara.A02935.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Glyma.07G092300 No alias CRS1 / YhbY (CRM) domain-containing protein 0.03 Orthogroups_2024-Update
Glyma.09G183900 No alias CRS1 / YhbY (CRM) domain-containing protein 0.02 Orthogroups_2024-Update
HORVU1Hr1G083550.4 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os05g47850 No alias chloroplastic group IIA intron splicing facilitator... 0.02 Orthogroups_2024-Update
MA_10432072g0010 No alias (at3g23070 : 659.0) Encodes a CRM domain protein CFM3a,... 0.03 Orthogroups_2024-Update
MA_10435740g0010 No alias (at3g18390 : 583.0) embryo defective 1865 (EMB1865);... 0.03 Orthogroups_2024-Update
Potri.006G149000 No alias CRS1 / YhbY (CRM) domain-containing protein 0.02 Orthogroups_2024-Update
Potri.T065600 No alias ortholog of maize chloroplast splicing factor CRS1 0.03 Orthogroups_2024-Update
Solyc09g083350 No alias Chloroplastic group IIA intron splicing facilitator... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 246 324
IPR001890 RNA-binding_CRM 442 526
IPR001890 RNA-binding_CRM 651 738
No external refs found!