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  5. Sopen02g031360

Sopen02g031360


Description : 3' exoribonuclease family, domain 1


Gene families : OG_42_0002046 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002046_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g031360
Cluster HCCA clusters: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
Brara.C03030.1 No alias EC_2.7 transferase transferring phosphorus-containing... 0.03 Orthogroups_2024-Update
Brara.E03499.1 No alias EC_2.7 transferase transferring phosphorus-containing... 0.01 Orthogroups_2024-Update
Brara.H01357.1 No alias phosphorolytic exoribonuclease *(PNP) & EC_2.7... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0003723 RNA binding IEA InterProScan predictions
BP GO:0006396 RNA processing IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR015847 ExoRNase_PH_dom2 201 263
IPR015848 PNPase_PH_RNA-bd_bac/org-type 297 375
IPR001247 ExoRNase_PH_dom1 68 198
IPR001247 ExoRNase_PH_dom1 379 512
IPR003029 S1_domain 682 753
No external refs found!