Sopen02g032720

Description : RecF/RecN/SMC N terminal domain

Gene families : OG_42_0006183 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006183_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen02g032720
Cluster	HCCA clusters: Cluster_70

Target	Alias	Description	ECC score	Gene Family Method
At5g48600	No alias	Structural maintenance of chromosomes protein...	0.02	Orthogroups_2024-Update
Brara.F03113.1	No alias	component *(CAP-C/SMC4) of condensin I/II complex	0.03	Orthogroups_2024-Update
Cre12.g493400	No alias	structural maintenance of chromosome 3	0.06	Orthogroups_2024-Update
Glyma.13G062800	No alias	structural maintenance of chromosome 3	0.03	Orthogroups_2024-Update
Glyma.19G022800	No alias	structural maintenance of chromosome 3	0.11	Orthogroups_2024-Update
Kfl00411_0100	kfl00411_0100_v1.1	(at5g48600 : 1014.0) member of SMC subfamily; structural...	0.02	Orthogroups_2024-Update
Seita.3G192100.1	No alias	component *(CAP-C/SMC4) of condensin I/II complex	0.03	Orthogroups_2024-Update
Sobic.009G184200.1	No alias	component *(CAP-C/SMC4) of condensin I/II complex	0.03	Orthogroups_2024-Update
Solyc02g087980	No alias	Structural maintenance of chromosomes protein (AHRD V3.3...	0.2	Orthogroups_2024-Update
evm.model.contig_3558.6	No alias	(at5g48600 : 612.0) member of SMC subfamily; structural...	0.08	Orthogroups_2024-Update
evm.model.tig00000711.41	No alias	(at5g48600 : 304.0) member of SMC subfamily; structural...	0.07	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	InterProScan predictions
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	IEA	InterProScan predictions
BP	GO:0006996	organelle organization	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0051276	chromosome organization	IEA	InterProScan predictions
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003395	RecF/RecN/SMC_N	28	766
IPR003395	RecF/RecN/SMC_N	824	1230
IPR010935	SMC_hinge	558	674

External Links

No external refs found!

Sopen02g032720

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation