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  5. Sopen02g033990

Sopen02g033990


Description : SRF-type transcription factor (DNA-binding and dimerisation domain)


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g033990
Cluster HCCA clusters: Cluster_136

Target Alias Description ECC score Gene Family Method Actions
A4A49_10096 No alias mads-box protein soc1 0.02 Orthogroups_2024-Update
A4A49_14235 No alias developmental protein sepallata 1 0.03 Orthogroups_2024-Update
A4A49_14828 No alias agamous-like mads-box protein agl104 0.03 Orthogroups_2024-Update
A4A49_19521 No alias developmental protein sepallata 1 0.04 Orthogroups_2024-Update
A4A49_27621 No alias agamous-like mads-box protein agl9 0.03 Orthogroups_2024-Update
A4A49_39464 No alias agamous-like mads-box protein agl8 0.05 Orthogroups_2024-Update
At1g65360 No alias Agamous-like MADS-box protein AGL23... 0.03 Orthogroups_2024-Update
At2g45660 No alias SOC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZL4] 0.03 Orthogroups_2024-Update
At4g22950 No alias Agamous-like MADS-box protein AGL19... 0.02 Orthogroups_2024-Update
Brara.C01461.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Brara.D02757.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Brara.I02103.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.02 Orthogroups_2024-Update
Glyma.01G020500 No alias AGAMOUS-like 21 0.03 Orthogroups_2024-Update
Glyma.02G287700 No alias K-box region and MADS-box transcription factor family protein 0.01 Orthogroups_2024-Update
LOC_Os03g54170 No alias OsMADS34 - MADS-box family gene with MIKCc type-box, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g02780 No alias OsMADS77 - MADS-box family gene with M-alpha type-box, expressed 0.02 Orthogroups_2024-Update
MA_101463g0010 No alias (q9xj60|mad50_orysa : 102.0) MADS-box transcription... 0.02 Orthogroups_2024-Update
MA_458668g0010 No alias (at2g45660 : 100.0) Controls flowering and is required... 0.03 Orthogroups_2024-Update
Mp4g11760.1 No alias transcription factor (MADS/AGL) 0.02 Orthogroups_2024-Update
Potri.T101400 No alias AGAMOUS-like 62 0.02 Orthogroups_2024-Update
Pp1s209_130V6 No alias mads-box transcription factor 0.01 Orthogroups_2024-Update
Sobic.009G142500.1 No alias component *(PISTILLATA) of AP3-PISTILLATA organ-identity... 0.02 Orthogroups_2024-Update
Solyc01g106710 No alias Transcription factor, MADS-box (AHRD V3.3 *** A0A103YIH6_CYNCS) 0.03 Orthogroups_2024-Update
Solyc03g114830 No alias FRUITFULL-like MADS-box 2 0.03 Orthogroups_2024-Update
Solyc06g069430 No alias FRUITFULL-like MADS-box 1 0.03 Orthogroups_2024-Update
Sopen04g001300 No alias SRF-type transcription factor (DNA-binding and... 0.04 Orthogroups_2024-Update
Sopen08g021160 No alias SRF-type transcription factor (DNA-binding and... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002487 TF_Kbox 85 172
IPR002100 TF_MADSbox 10 57
No external refs found!