Sopen02g034050

Description : E3 ubiquitin-protein ligase UBR4

Gene families : OG_42_0003188 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003188_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen02g034050
Cluster	HCCA clusters: Cluster_207

Target	Alias	Description	ECC score	Gene Family Method
141341	No alias	auxin transport protein (BIG)	0.03	Orthogroups_2024-Update
Bradi4g08567	No alias	auxin transport protein (BIG)	0.03	Orthogroups_2024-Update
Kfl00244_0050	kfl00244_0050_v1.1	(at3g02260 : 865.0) Calossin-like protein required for...	0.03	Orthogroups_2024-Update
Seita.2G154800.1	No alias	regulatory protein *(BIG) of auxin transport	0.02	Orthogroups_2024-Update
evm.model.tig00000158.22	No alias	(at3g02260 : 604.0) Calossin-like protein required for...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR025704	E3_Ub_ligase_UBR4	4174	5079
IPR000433	Znf_ZZ	2603	2635

External Links

No external refs found!