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  5. Sopen02g034930

Sopen02g034930


Description : PPR repeat family


Gene families : OG_42_0003994 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003994_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g034930
Cluster HCCA clusters: Cluster_198

Target Alias Description ECC score Gene Family Method Actions
136241 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
80365 No alias pentatricopeptide (PPR) repeat-containing protein 0.04 Orthogroups_2024-Update
Brara.C04316.1 No alias Unknown function 0.03 Orthogroups_2024-Update
MA_445076g0010 No alias (at2g13600 : 511.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
Potri.005G131800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Seita.5G358700.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc02g090240 No alias Pentatricopeptide repeat-containing protein, putative... 0.04 Orthogroups_2024-Update
Sopen03g003310 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 308 356
IPR002885 Pentatricopeptide_repeat 207 254
IPR002885 Pentatricopeptide_repeat 105 151
IPR002885 Pentatricopeptide_repeat 4 52
IPR002885 Pentatricopeptide_repeat 79 104
IPR002885 Pentatricopeptide_repeat 382 404
No external refs found!