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  5. Sopen02g036880

Sopen02g036880


Description : PPR repeat


Gene families : OG_42_0004203 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004203_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g036880
Cluster HCCA clusters: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
Bradi2g46360 No alias pentatricopeptide (PPR) repeat-containing protein 0.04 Orthogroups_2024-Update
GRMZM2G059449 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Orthogroups_2024-Update
PSME_00003767-RA No alias (at5g67570 : 320.0) Encodes a pentratricopeptide repeat... 0.02 Orthogroups_2024-Update
Potri.001G459900 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Orthogroups_2024-Update
Seita.9G353900.1 No alias regulatory factor *(DG1) of plastid-encoded RNA... 0.03 Orthogroups_2024-Update
Sobic.001G326300.1 No alias regulatory factor *(DG1) of plastid-encoded RNA... 0.02 Orthogroups_2024-Update
Sobic.003G254000.1 No alias plastidial mRNA processing factor *(SOT5) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 516 536
IPR002885 Pentatricopeptide_repeat 254 280
IPR002885 Pentatricopeptide_repeat 409 438
IPR002885 Pentatricopeptide_repeat 333 377
No external refs found!