Sopen02g037950

Description : Reverse transcriptase (RNA-dependent DNA polymerase)

Gene families : OG_42_0004918 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004918_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen02g037950
Cluster	HCCA clusters: Cluster_315

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	InterProScan predictions
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR025724	GAG-pre-integrase_dom	703	780
IPR002885	Pentatricopeptide_repeat	1575	1620
IPR002885	Pentatricopeptide_repeat	1476	1503
IPR002885	Pentatricopeptide_repeat	1816	1843
IPR002885	Pentatricopeptide_repeat	1450	1469
IPR002885	Pentatricopeptide_repeat	1780	1806
IPR002885	Pentatricopeptide_repeat	1752	1777
IPR002885	Pentatricopeptide_repeat	1375	1401
IPR002885	Pentatricopeptide_repeat	1683	1707
IPR013103	RVT_2	1154	1346
IPR001584	Integrase_cat-core	794	907

External Links

No external refs found!