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  5. Sopen02g039240

Sopen02g039240


Description : DEAD/DEAH box helicase


Gene families : OG_42_0005308 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005308_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g039240
Cluster HCCA clusters: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
At3g02060 No alias ATP-dependent DNA helicase At3g02060, chloroplastic... 0.02 Orthogroups_2024-Update
Bradi4g17160 No alias DEAD/DEAH box helicase, putative 0.04 Orthogroups_2024-Update
Glyma.16G046000 No alias DEAD/DEAH box helicase, putative 0.02 Orthogroups_2024-Update
MA_190693g0010 No alias (at3g02060 : 163.0) DEAD/DEAH box helicase, putative;... 0.03 Orthogroups_2024-Update
Solyc02g094590 No alias Dead box ATP-dependent RNA helicase, putative (AHRD V3.3... 0.07 Orthogroups_2024-Update
evm.model.contig_3445.4 No alias (at3g02060 : 432.0) DEAD/DEAH box helicase, putative;... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
BP GO:0006281 DNA repair IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003711 CarD-like/TRCF_domain 145 245
IPR005118 TRCF_C 678 763
IPR011545 DEAD/DEAH_box_helicase_dom 275 433
IPR001650 Helicase_C 475 580
No external refs found!