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  5. Sopen03g001180

Sopen03g001180


Description : PHD-finger


Gene families : OG_42_0000522 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000522_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen03g001180
Cluster HCCA clusters: Cluster_293

Target Alias Description ECC score Gene Family Method Actions
A4A49_12811 No alias increased dna methylation 1 0.02 Orthogroups_2024-Update
At3g14980 No alias Increased DNA methylation 1... 0.03 Orthogroups_2024-Update
At4g14920 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.03 Orthogroups_2024-Update
Potri.002G051400 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.02 Orthogroups_2024-Update
Potri.002G118600 No alias PHD finger transcription factor, putative 0.03 Orthogroups_2024-Update
Potri.010G087700 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.03 Orthogroups_2024-Update
Seita.2G048300.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032308 Jas 552 624
IPR019787 Znf_PHD-finger 665 707
No external refs found!