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  5. Sopen03g001250

Sopen03g001250


Description : Core histone H2A/H2B/H3/H4


Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen03g001250
Cluster HCCA clusters: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
A4A49_29055 No alias putative histone h2a.4 0.03 Orthogroups_2024-Update
A4A49_30810 No alias histone h2ax 0.03 Orthogroups_2024-Update
At5g02560 No alias Histone H2A [Source:UniProtKB/TrEMBL;Acc:F4KCF4] 0.04 Orthogroups_2024-Update
Bradi4g28560 No alias histone H2A 6 0.02 Orthogroups_2024-Update
Brara.B03550.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Glyma.03G241800 No alias gamma histone variant H2AX 0.02 Orthogroups_2024-Update
Glyma.13G334300 No alias histone H2A 12 0.02 Orthogroups_2024-Update
Glyma.15G040200 No alias histone H2A 12 0.02 Orthogroups_2024-Update
Glyma.15G040300 No alias histone H2A 12 0.03 Orthogroups_2024-Update
HORVU6Hr1G011490.2 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU6Hr1G021160.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU7Hr1G100100.3 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU7Hr1G100110.4 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU7Hr1G100120.13 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU7Hr1G112470.1 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
LOC_Os03g17100 No alias Core histone H2A/H2B/H3/H4 domain containing protein,... 0.02 Orthogroups_2024-Update
MA_962778g0010 No alias (q2hu68|h2a1_medtr : 184.0) Probable histone H2A.1 -... 0.03 Orthogroups_2024-Update
Potri.004G031300 No alias histone H2A 2 0.02 Orthogroups_2024-Update
Solyc01g099410 No alias Histone H2A (AHRD V3.3 *** G8IIJ5_SOLLC) 0.03 Orthogroups_2024-Update
Solyc03g005220 No alias calcium-dependent protein kinase 21 (AHRD V3.3 --* AT4G04720.2) 0.05 Orthogroups_2024-Update
Solyc09g074300 No alias Histone H2A (AHRD V3.3 *** K4CV07_SOLLC) 0.04 Orthogroups_2024-Update
Solyc09g082710 No alias Histone H2A (AHRD V3.3 *** K4CVP7_SOLLC) 0.04 Orthogroups_2024-Update
Solyc10g006560 No alias Histone H2A (AHRD V3.3 *** A0A0V0H7M3_SOLCH) 0.04 Orthogroups_2024-Update
Solyc11g073250 No alias Histone H2A (AHRD V3.3 *** K4DB31_SOLLC) 0.04 Orthogroups_2024-Update
Solyc12g005270 No alias Histone H2A (AHRD V3.3 *** K4DB65_SOLLC) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 17 96
IPR032454 Histone_H2A_C 99 132
No external refs found!