Sopen03g001490

Description : SNF2 family N-terminal domain

Gene families : OG_42_0001293 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001293_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen03g001490
Cluster	HCCA clusters: Cluster_100

Target	Alias	Description	ECC score	Gene Family Method
Glyma.20G087900	No alias	Helicase protein with RING/U-box domain	0.1	Orthogroups_2024-Update
Kfl00278_0040	kfl00278_0040_v1....	(at5g22750 : 995.0) DNA repair gene. gamma-radiation...	0.02	Orthogroups_2024-Update
Sobic.006G029300.1	No alias	chromatin remodeling factor *(Rad5)	0.15	Orthogroups_2024-Update
Solyc03g005460	No alias	Helicase protein with RING/U-box domain-containing...	0.16	Orthogroups_2024-Update
Solyc11g066790	No alias	Helicase protein with RING/U-box domain-containing...	0.06	Orthogroups_2024-Update
evm.model.tig00021105.35	No alias	(at5g43530 : 225.0) Helicase protein with RING/U-box...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEA	InterProScan predictions
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	IEA	InterProScan predictions
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	464	833
IPR018957	Znf_C3HC4_RING-type	885	924
IPR001650	Helicase_C	957	1067
IPR014905	HIRAN	231	334

External Links

No external refs found!