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  5. Sopen03g001870

Sopen03g001870


Description : ABC transporter transmembrane region


Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen03g001870
Cluster HCCA clusters: Cluster_203

Target Alias Description ECC score Gene Family Method Actions
GRMZM5G833207 No alias ATP binding cassette subfamily B4 0.03 Orthogroups_2024-Update
LOC_Os01g74470 No alias ABC transporter, ATP-binding protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g47490 No alias MDR-like ABC transporter, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g05710 No alias ABC transporter, ATP-binding protein, putative, expressed 0.03 Orthogroups_2024-Update
Solyc12g098840 No alias ABC transporter B family protein (AHRD V3.3 *** G7IBR0_MEDTR) 0.04 Orthogroups_2024-Update
Sopen09g003060 No alias ABC transporter transmembrane region 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0016021 integral component of membrane IEA InterProScan predictions
MF GO:0016887 ATPase activity IEA InterProScan predictions
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEA InterProScan predictions
BP GO:0055085 transmembrane transport IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 894 1043
IPR011527 ABC1_TM_dom 2 155
IPR011527 ABC1_TM_dom 553 825
IPR003439 ABC_transporter-like 227 374
No external refs found!