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  5. Sopen03g003010

Sopen03g003010


Description : DEAD/DEAH box helicase


Gene families : OG_42_0000844 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000844_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen03g003010
Cluster HCCA clusters: Cluster_198

Target Alias Description ECC score Gene Family Method Actions
Cre17.g727700 No alias DEAD box RNA helicase (RH3) 0.02 Orthogroups_2024-Update
Potri.015G133400 No alias DEAD box RNA helicase (PRH75) 0.03 Orthogroups_2024-Update
Pp1s163_96V6 No alias dead box atp-dependent rna 0.02 Orthogroups_2024-Update
Pp1s54_79V6 No alias nucleolar rna helicase 2 0.02 Orthogroups_2024-Update
Pp1s67_231V6 No alias rna helicase 0.04 Orthogroups_2024-Update
evm.model.contig_3450.5 No alias (q41382|rh7_spiol : 422.0) DEAD-box ATP-dependent RNA... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0003723 RNA binding IEA InterProScan predictions
MF GO:0004386 helicase activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 136 313
IPR012562 GUCT 546 640
IPR001650 Helicase_C 359 457
No external refs found!