Sopen03g003090

Description : CPSF A subunit region

Gene families : OG_42_0004693 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004693_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen03g003090
Cluster	HCCA clusters: Cluster_175

Target	Alias	Description	ECC score	Gene Family Method
Bradi5g04673	No alias	cleavage and polyadenylation specificity factor 160	0.04	Orthogroups_2024-Update
Pp1s61_42V6	No alias	cleavage and polyadenylation specific factor isoform cra_a	0.02	Orthogroups_2024-Update
Seita.7G028600.1	No alias	component *(CPSF160/Yhh1) of Cleavage and...	0.02	Orthogroups_2024-Update
Solyc03g007100	No alias	Cleavage and polyadenylation specificity factor subunit...	0.05	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR004871	Cleavage/polyA-sp_fac_asu_C	1081	1412

External Links

No external refs found!