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  5. Sopen03g003310

Sopen03g003310


Description : PPR repeat family


Gene families : OG_42_0003994 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003994_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen03g003310
Cluster HCCA clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
96526 No alias mitochondrial editing factor 22 0.02 Orthogroups_2024-Update
Glyma.07G208750 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
MA_445076g0010 No alias (at2g13600 : 511.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00037569-RA No alias (at2g13600 : 504.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
Potri.005G131800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Seita.3G019500.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.006G262800.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc02g090240 No alias Pentatricopeptide repeat-containing protein, putative... 0.05 Orthogroups_2024-Update
Solyc03g007350 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.05 Orthogroups_2024-Update
Sopen02g034930 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 310 338
IPR002885 Pentatricopeptide_repeat 44 72
IPR002885 Pentatricopeptide_repeat 282 305
IPR002885 Pentatricopeptide_repeat 545 569
IPR002885 Pentatricopeptide_repeat 14 42
IPR002885 Pentatricopeptide_repeat 343 369
IPR002885 Pentatricopeptide_repeat 470 517
IPR002885 Pentatricopeptide_repeat 174 219
IPR002885 Pentatricopeptide_repeat 370 416
No external refs found!