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  5. Sopen03g004520

Sopen03g004520


Description : PPR repeat


Gene families : OG_42_0004610 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004610_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen03g004520
Cluster HCCA clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
At1g74400 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Orthogroups_2024-Update
Brara.G02277.1 No alias Unknown function 0.02 Orthogroups_2024-Update
PSME_00055556-RA No alias (at3g13770 : 367.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
Potri.015G128800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Sobic.002G198801.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc03g025700 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 241 264
IPR002885 Pentatricopeptide_repeat 437 457
IPR002885 Pentatricopeptide_repeat 141 165
IPR002885 Pentatricopeptide_repeat 170 212
IPR002885 Pentatricopeptide_repeat 267 311
IPR002885 Pentatricopeptide_repeat 366 410
No external refs found!