Sopen03g004560

Description : Zinc knuckle

Gene families : OG_42_0009111 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009111_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen03g004560
Cluster	HCCA clusters: Cluster_285

Target	Alias	Description	ECC score	Gene Family Method	Actions
Brara.C01430.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
Glyma.10G235200	No alias	VASCULAR-RELATED NAC-DOMAIN 6	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR025836	Zn_knuckle_CX2CX4HX4C	97	113
IPR025836	Zn_knuckle_CX2CX4HX4C	123	140
IPR025836	Zn_knuckle_CX2CX4HX4C	178	193
IPR001878	Znf_CCHC	73	88
IPR001878	Znf_CCHC	152	167

External Links

No external refs found!