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  5. Sopen03g005120

Sopen03g005120


Description : RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Gene families : OG_42_0001097 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001097_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen03g005120
Cluster HCCA clusters: Cluster_361

Target Alias Description ECC score Gene Family Method Actions
A4A49_09436 No alias serinearginine-rich splicing factor rs41 0.03 Orthogroups_2024-Update
Bradi5g01430 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
PSME_00001274-RA No alias (at4g25500 : 298.0) encodes an arginine/serine-rich... 0.02 Orthogroups_2024-Update
PSME_00001279-RA No alias (at4g25500 : 278.0) encodes an arginine/serine-rich... 0.02 Orthogroups_2024-Update
PSME_00035961-RA No alias (at4g25500 : 255.0) encodes an arginine/serine-rich... 0.02 Orthogroups_2024-Update
Potri.002G175000 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
Pp1s144_89V6 No alias arginine serine-rich splicing factor rsp41 0.03 Orthogroups_2024-Update
Seita.9G568700.1 No alias RNA splicing factor *(RS31/40/41) 0.02 Orthogroups_2024-Update
Sobic.004G020700.1 No alias RNA splicing factor *(RS31/40/41) 0.01 Orthogroups_2024-Update
Solyc01g091750 No alias Arginine/serine-rich splicing factor (AHRD V3.3 *** D8L816_9POAL) 0.03 Orthogroups_2024-Update
Solyc03g026240 No alias Arginine/serine-rich splicing factor, putative (AHRD... 0.06 Orthogroups_2024-Update
Solyc11g072340 No alias Arginine/serine-rich splicing factor RSP41, putative... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000504 RRM_dom 55 117
No external refs found!