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  5. Sopen03g005350

Sopen03g005350


Description : PPR repeat family


Gene families : OG_42_0001076 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001076_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen03g005350
Cluster HCCA clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
A4A49_19426 No alias pentatricopeptide repeat-containing protein, mitochondrial 0.03 Orthogroups_2024-Update
At1g55890 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.02 Orthogroups_2024-Update
At3g13160 No alias Pentatricopeptide repeat-containing protein At3g13160,... 0.02 Orthogroups_2024-Update
At4g36680 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.06 Orthogroups_2024-Update
Bradi3g49480 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.A03283.1 No alias component *(mS78/mS79) of small mitoribosomal-subunit proteome 0.08 Orthogroups_2024-Update
Brara.A03285.1 No alias component *(mS78/mS79) of small mitoribosomal-subunit proteome 0.07 Orthogroups_2024-Update
Brara.I01086.1 No alias component *(mL103) of large mitoribosomal-subunit... 0.05 Orthogroups_2024-Update
GRMZM2G165290 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.07G187800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.08G061500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Orthogroups_2024-Update
PSME_00052702-RA No alias (at1g61870 : 222.0) pentatricopeptide repeat 336... 0.02 Orthogroups_2024-Update
Potri.004G029900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.004G030000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.007G028400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Potri.011G032400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.1G238500.1 No alias component *(mL103) of large mitoribosomal-subunit proteome 0.06 Orthogroups_2024-Update
Seita.1G244100.1 No alias component *(mL103) of large mitoribosomal-subunit proteome 0.05 Orthogroups_2024-Update
Seita.6G198700.1 No alias component *(mS78/mS79) of small mitoribosomal-subunit proteome 0.02 Orthogroups_2024-Update
Sobic.004G223800.1 No alias component *(mL103) of large mitoribosomal-subunit... 0.07 Orthogroups_2024-Update
Solyc02g062910 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.08 Orthogroups_2024-Update
Solyc03g031460 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 97 122
IPR002885 Pentatricopeptide_repeat 304 333
IPR002885 Pentatricopeptide_repeat 128 155
IPR002885 Pentatricopeptide_repeat 160 204
IPR002885 Pentatricopeptide_repeat 230 279
No external refs found!