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  5. Sopen03g005590

Sopen03g005590


Description : RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Gene families : OG_42_0000344 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000344_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen03g005590
Cluster HCCA clusters: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
At1g49600 No alias RNA-binding protein 47A [Source:TAIR;Acc:AT1G49600] 0.04 Orthogroups_2024-Update
Brara.E02288.1 No alias regulatory factor *(RBP45/47) of mRNA stress granule formation 0.03 Orthogroups_2024-Update
Brara.F00344.1 No alias regulatory factor *(RBP45/47) of mRNA stress granule formation 0.02 Orthogroups_2024-Update
GRMZM2G420713 No alias RNA-binding protein 47C\' 0.02 Orthogroups_2024-Update
Glyma.07G210800 No alias RNA-binding protein 47B 0.03 Orthogroups_2024-Update
Glyma.14G080600 No alias RNA-binding protein 47C 0.03 Orthogroups_2024-Update
LOC_Os04g37690 No alias RNA recognition motif containing protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os08g09100 No alias RNA recognition motif containing protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g28810 No alias RNA recognition motif containing protein, putative, expressed 0.02 Orthogroups_2024-Update
evm.model.tig00021489.29 No alias (at1g47500 : 247.0) RNA-binding protein 47C' (RBP47C');... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000504 RRM_dom 273 337
IPR000504 RRM_dom 167 236
IPR000504 RRM_dom 74 141
No external refs found!