Sopen03g005820

Description : Auxin response factor

Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen03g005820
Cluster	HCCA clusters: Cluster_306

Target	Alias	Description	ECC score	Gene Family Method
A4A49_18150	No alias	auxin response factor 8	0.04	Orthogroups_2024-Update
At1g34170	No alias	Auxin response factor [Source:UniProtKB/TrEMBL;Acc:F4HT52]	0.02	Orthogroups_2024-Update
Brara.E00126.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Brara.F02033.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
GRMZM2G006042	No alias	auxin response factor 2	0.03	Orthogroups_2024-Update
GRMZM5G874163	No alias	Transcriptional factor B3 family protein /...	0.02	Orthogroups_2024-Update
Glyma.06G164900	No alias	auxin response factor 2	0.02	Orthogroups_2024-Update
Glyma.12G174100	No alias	auxin response factor 16	0.05	Orthogroups_2024-Update
Glyma.13G084700	No alias	auxin response factor 17	0.03	Orthogroups_2024-Update
Glyma.13G112600	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Glyma.13G140600	No alias	auxin response factor 16	0.03	Orthogroups_2024-Update
Glyma.14G032700	No alias	auxin response factor 6	0.02	Orthogroups_2024-Update
Glyma.17G047100	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Glyma.19G206100	No alias	auxin response factor 2	0.03	Orthogroups_2024-Update
LOC_Os06g09660	No alias	auxin response factor, putative, expressed	0.02	Orthogroups_2024-Update
Potri.002G207050	No alias	auxin response factor 2	0.03	Orthogroups_2024-Update
Potri.014G135300	No alias	auxin response factor 2	0.02	Orthogroups_2024-Update
Seita.1G090900.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.03	Orthogroups_2024-Update
Seita.8G135700.1	No alias	ARF-type transcription factor	0.04	Orthogroups_2024-Update
Sobic.003G251700.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.006G262100.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Sopen04g034850	No alias	Auxin response factor	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	InterProScan predictions
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	127	228
IPR010525	Auxin_resp	253	336
IPR033389	AUX/IAA_dom	709	803

External Links

No external refs found!

Sopen03g005820

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation