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  5. Sopen03g005910

Sopen03g005910


Description : Ring finger domain


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen03g005910
Cluster HCCA clusters: Cluster_324

Target Alias Description ECC score Gene Family Method Actions
121181 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
405202 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
A4A49_21361 No alias ring-h2 finger protein atl78 0.02 Orthogroups_2024-Update
At1g72200 No alias RING-H2 finger protein ATL11... 0.04 Orthogroups_2024-Update
At2g47560 No alias RING-H2 finger protein ATL64... 0.03 Orthogroups_2024-Update
Bradi2g55990 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi5g19960 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Brara.C03025.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.G03117.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Brara.H00318.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.H01408.1 No alias regulatory E3 ubiquitin ligase targeted to IRT1 *(IDF1) 0.03 Orthogroups_2024-Update
Cre11.g476250 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.01 Orthogroups_2024-Update
GRMZM2G015409 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G386584 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G467187 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.13G170300 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
HORVU3Hr1G028370.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
LOC_Os06g34400 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_6697g0010 No alias (at1g72310 : 120.0) Encodes a putative RING-H2 zinc... 0.02 Orthogroups_2024-Update
MA_81046g0010 No alias (at1g49230 : 127.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
PSME_00003015-RA No alias (at3g05200 : 122.0) Encodes a putative RING-H2 zinc... 0.05 Orthogroups_2024-Update
PSME_00034763-RA No alias (at5g05280 : 85.1) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
Potri.005G036800 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.006G201500 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.008G219200 No alias TOXICOS EN LEVADURA 2 0.02 Orthogroups_2024-Update
Potri.012G003900 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Pp1s313_29V6 No alias zinc finger (c3hc4-type ring finger) family protein 0.03 Orthogroups_2024-Update
Seita.1G203700.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Seita.1G252600.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.2G037300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.4G088200.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.7G321400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G038733.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.07 Orthogroups_2024-Update
Sobic.004G109200.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.004G348500.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Solyc02g086950 No alias LOW QUALITY:RING/U-box superfamily protein, putative... 0.03 Orthogroups_2024-Update
Solyc11g005310 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT1G49230.1) 0.06 Orthogroups_2024-Update
Solyc11g007530 No alias RING/U-box superfamily protein (AHRD V3.3 *** A0A061DVK5_THECC) 0.03 Orthogroups_2024-Update
Sopen02g031720 No alias Ring finger domain 0.04 Orthogroups_2024-Update
evm.model.tig00020684.6 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001841 Znf_RING 102 145
No external refs found!