Sopen03g006250

Description : Zinc knuckle

Gene families : OG_42_0001475 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001475_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen03g006250
Cluster	HCCA clusters: Cluster_115

Target	Alias	Description	ECC score	Gene Family Method	Actions
LOC_Os08g03520	No alias	retrotransposon protein, putative, Ty1-copia subclass, expressed	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001878	Znf_CCHC	199	215
IPR001878	Znf_CCHC	113	128
IPR001878	Znf_CCHC	271	287
IPR001878	Znf_CCHC	230	245
IPR001878	Znf_CCHC	144	158
IPR001878	Znf_CCHC	171	186
IPR002059	CSP_DNA-bd	9	72

External Links

No external refs found!