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  5. Sopen03g007400

Sopen03g007400


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0001783 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001783_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen03g007400

Target Alias Description ECC score Gene Family Method Actions
Solyc10g012460 No alias No description available 0.04 Orthogroups_2024-Update
Sopen00g009510 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen04g022000 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen04g028260 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen06g008220 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen06g011710 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen07g007590 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen09g014140 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen09g027000 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR013103 RVT_2 858 926
IPR013103 RVT_2 719 857
IPR025724 GAG-pre-integrase_dom 447 499
IPR029472 Copia-like_N 16 59
IPR005162 Retrotrans_gag_dom 82 186
No external refs found!