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  5. Sopen03g009830

Sopen03g009830


Description : Integrase core domain


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen03g009830
Cluster HCCA clusters: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
Sopen09g024800 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
evm.model.contig_3584.1 No alias (p10978|polx_tobac : 128.0) Retrovirus-related Pol... 0.01 Orthogroups_2024-Update
evm.model.contig_4573.1 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
evm.model.contig_577.4 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR025724 GAG-pre-integrase_dom 92 141
IPR001584 Integrase_cat-core 159 270
IPR025314 DUF4219 19 44
No external refs found!