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  5. Solyc01g009530

Solyc01g009530


Description : LOW QUALITY:plant/protein (AHRD V3.3 *-* AT5G43400.1)


Gene families : OG_42_0001978 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001978_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g009530
Cluster HCCA clusters: Cluster_149

Target Alias Description ECC score Gene Family Method Actions
Kfl00006_0520 kfl00006_0520_v1.1 (at5g13210 : 575.0) Uncharacterised conserved protein... 0.01 Orthogroups_2024-Update
Sobic.001G103500.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003954 NADH dehydrogenase activity IEP Predicted GO
CC GO:0005801 cis-Golgi network IEP Predicted GO
BP GO:0006904 vesicle docking involved in exocytosis IEP Predicted GO
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
BP GO:0022406 membrane docking IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
BP GO:0048278 vesicle docking IEP Predicted GO
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0051640 organelle localization IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
BP GO:0140029 exocytic process IEP Predicted GO
BP GO:0140056 organelle localization by membrane tethering IEP Predicted GO
InterPro domains Description Start Stop
IPR024553 DUF2828 19 66
IPR024553 DUF2828 138 213
IPR024553 DUF2828 77 137
No external refs found!