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  5. Sopen03g011280

Sopen03g011280


Description : gag-polypeptide of LTR copia-type


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen03g011280
Cluster HCCA clusters: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
A4A49_24733 No alias phosphoglucomutase, cytoplasmic 0.03 Orthogroups_2024-Update
Solyc04g011970 No alias No description available 0.04 Orthogroups_2024-Update
Solyc05g021080 No alias No description available 0.03 Orthogroups_2024-Update
Sopen02g020410 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen03g025100 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen04g023600 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen05g013410 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen05g019250 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen05g024980 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen07g004360 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen09g017310 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 224 240
No external refs found!