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  5. Sopen03g011350

Sopen03g011350


Description : S1 RNA binding domain


Gene families : OG_42_0002877 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002877_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen03g011350
Cluster HCCA clusters: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
148115 No alias RNA binding;RNA binding 0.06 Orthogroups_2024-Update
At3g11964 No alias rRNA biogenesis protein RRP5... 0.07 Orthogroups_2024-Update
Bradi1g38227 No alias RNA binding;RNA binding 0.17 Orthogroups_2024-Update
Brara.A03376.1 No alias SSU processome assembly factor *(RRP5) 0.09 Orthogroups_2024-Update
Brara.E02887.1 No alias SSU processome assembly factor *(RRP5) 0.05 Orthogroups_2024-Update
Brara.K00989.1 No alias SSU processome assembly factor *(RRP5) 0.05 Orthogroups_2024-Update
Cre10.g428750 No alias RNA binding;RNA binding 0.07 Orthogroups_2024-Update
GRMZM2G039746 No alias RNA binding;RNA binding 0.03 Orthogroups_2024-Update
Glyma.02G168900 No alias RNA binding;RNA binding 0.06 Orthogroups_2024-Update
Glyma.09G104000 No alias RNA binding;RNA binding 0.07 Orthogroups_2024-Update
HORVU1Hr1G014010.25 No alias SSU processome assembly factor *(RRP5) 0.09 Orthogroups_2024-Update
LOC_Os07g10350 No alias S1 RNA binding domain containing protein, expressed 0.04 Orthogroups_2024-Update
PSME_00005935-RA No alias (at3g11964 : 210.0) RNA binding;RNA binding; FUNCTIONS... 0.02 Orthogroups_2024-Update
Potri.016G062600 No alias RNA binding;RNA binding 0.03 Orthogroups_2024-Update
Pp1s102_101V6 No alias rrna biogenesis protein rrp5 0.02 Orthogroups_2024-Update
Pp1s102_102V6 No alias pre-rrna processing protein rrp5 0.02 Orthogroups_2024-Update
Seita.2G077000.1 No alias SSU processome assembly factor *(RRP5) 0.12 Orthogroups_2024-Update
Sobic.002G071400.1 No alias SSU processome assembly factor *(RRP5) 0.11 Orthogroups_2024-Update
Solyc03g051900 No alias Protein RRP5-like protein (AHRD V3.3 *** W9QKL3_9ROSA) 0.08 Orthogroups_2024-Update
evm.model.contig_2143.1 No alias (at3g11964 : 182.0) RNA binding;RNA binding; FUNCTIONS... 0.07 Orthogroups_2024-Update
evm.model.tig00000605.10 No alias (at3g11964 : 197.0) RNA binding;RNA binding; FUNCTIONS... 0.04 Orthogroups_2024-Update
evm.model.tig00000605.11 No alias (at3g11964 : 172.0) RNA binding;RNA binding; FUNCTIONS... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006397 mRNA processing IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR008847 Suf 1796 1893
IPR003029 S1_domain 730 799
IPR003029 S1_domain 465 528
IPR003029 S1_domain 1425 1497
IPR003029 S1_domain 558 621
No external refs found!