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  5. Sopen03g019850

Sopen03g019850


Description : Pectate lyase


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen03g019850
Cluster HCCA clusters: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
At1g04680 No alias Pectate lyase [Source:UniProtKB/TrEMBL;Acc:A0A178W464] 0.02 Orthogroups_2024-Update
At3g07010 No alias Probable pectate lyase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8Z8] 0.03 Orthogroups_2024-Update
Brara.G01649.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.04 Orthogroups_2024-Update
Brara.K01484.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
PSME_00000524-RA No alias (at4g24780 : 590.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
Potri.001G052300 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.003G175900 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.008G182200 No alias Pectate lyase family protein 0.03 Orthogroups_2024-Update
Pp1s67_160V6 No alias pectate lyase 0.02 Orthogroups_2024-Update
Solyc03g071570 No alias Pectate lyase (AHRD V3.3 *** K4BHI7_SOLLC) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002022 Pec_lyase 160 343
No external refs found!