Sopen03g021380

Description : Reverse transcriptase-like

Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen03g021380
Cluster	HCCA clusters: Cluster_55

Target	Alias	Description	ECC score	Gene Family Method
A4A49_38895	No alias	hypothetical protein	0.04	Orthogroups_2024-Update
Cre08.g358542	No alias	Function unknown	0.04	Orthogroups_2024-Update
HORVU0Hr1G011670.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
HORVU0Hr1G014810.2	No alias	Unknown function	0.03	Orthogroups_2024-Update
HORVU0Hr1G039350.2	No alias	Unknown function	0.03	Orthogroups_2024-Update
HORVU6Hr1G002090.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
HORVU6Hr1G084730.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Kfl00590_0100	kfl00590_0100_v1.1	no hits & (original description: no original description)	0.02	Orthogroups_2024-Update
Solyc04g040100	No alias	No description available	0.04	Orthogroups_2024-Update
Solyc09g055290	No alias	No description available	0.06	Orthogroups_2024-Update
Solyc10g012010	No alias	No description available	0.03	Orthogroups_2024-Update
Solyc11g063750	No alias	No description available	0.03	Orthogroups_2024-Update
Sopen00g005290	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.05	Orthogroups_2024-Update
Sopen01g008200	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.02	Orthogroups_2024-Update
Sopen01g012600	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen01g013800	No alias	Chromo (CHRromatin Organisation MOdifier) domain	0.05	Orthogroups_2024-Update
Sopen02g004560	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.02	Orthogroups_2024-Update
Sopen02g006530	No alias	Integrase core domain	0.03	Orthogroups_2024-Update
Sopen04g009770	No alias	Integrase core domain	0.05	Orthogroups_2024-Update
Sopen04g020280	No alias	Integrase core domain	0.03	Orthogroups_2024-Update
Sopen05g017590	No alias	Retrotransposon gag protein	0.03	Orthogroups_2024-Update
Sopen06g009810	No alias	Retroviral aspartyl protease	0.03	Orthogroups_2024-Update
Sopen06g012340	No alias	Integrase core domain	0.03	Orthogroups_2024-Update
Sopen07g010190	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.04	Orthogroups_2024-Update
Sopen08g014830	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen08g027770	No alias	Cytochrome P450	0.03	Orthogroups_2024-Update
Sopen09g030490	No alias	Retroviral aspartyl protease	0.04	Orthogroups_2024-Update
Sopen10g005990	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.02	Orthogroups_2024-Update
Sopen10g008640	No alias	Retrotransposon gag protein	0.04	Orthogroups_2024-Update
Sopen10g015090	No alias	Integrase core domain	0.03	Orthogroups_2024-Update
Sopen10g022370	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen11g009960	No alias	Retrotransposon gag protein	0.03	Orthogroups_2024-Update
Sopen11g021290	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen11g022720	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEA	InterProScan predictions
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	InterProScan predictions
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002156	RNaseH_domain	404	523
IPR001584	Integrase_cat-core	695	804
IPR000477	RT_dom	34	160

External Links

No external refs found!

Sopen03g021380

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation