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  5. Solyc02g031710

Solyc02g031710


Description : SBP (S-ribonuclease binding protein) family protein (AHRD V3.3 *** AT3G12920.1)


Gene families : OG_42_0000224 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000224_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc02g031710
Cluster HCCA clusters: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
Glyma.04G003600 No alias SBP (S-ribonuclease binding protein) family protein 0.04 Orthogroups_2024-Update
Glyma.09G019900 No alias SBP (S-ribonuclease binding protein) family protein 0.03 Orthogroups_2024-Update
Glyma.11G091300 No alias SBP (S-ribonuclease binding protein) family protein 0.03 Orthogroups_2024-Update
PSME_00048517-RA No alias (at1g10650 : 181.0) SBP (S-ribonuclease binding protein)... 0.02 Orthogroups_2024-Update
Seita.1G176300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G141600.1 No alias E3 ubiquitin ligase *(BRG) 0.03 Orthogroups_2024-Update
Sopen02g009960 No alias Zinc finger, C3HC4 type (RING finger) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0006405 RNA export from nucleus IEP Predicted GO
BP GO:0006406 mRNA export from nucleus IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006812 cation transport IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
BP GO:0015931 nucleobase-containing compound transport IEP Predicted GO
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
BP GO:0050657 nucleic acid transport IEP Predicted GO
BP GO:0050658 RNA transport IEP Predicted GO
BP GO:0051028 mRNA transport IEP Predicted GO
BP GO:0051168 nuclear export IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0051236 establishment of RNA localization IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!