1. Home
  2. Species
  3. Solanum pennellii
  4. Sequence
  5. Sopen03g023030

Sopen03g023030


Description : PPR repeat family


Gene families : OG_42_0004912 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004912_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen03g023030
Cluster HCCA clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
At3g49240 No alias Pentatricopeptide repeat-containing protein At3g49240,... 0.05 Orthogroups_2024-Update
Brara.A02187.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Brara.F02071.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Glyma.04G235800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Orthogroups_2024-Update
Glyma.06G128900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os11g24570 No alias PPR repeat domain containing protein, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00034425-RA No alias (at3g49240 : 238.0) embryo defective 1796 (emb1796);... 0.02 Orthogroups_2024-Update
Potri.012G015400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Seita.3G254800.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.003G208300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.009G210100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc03g083280 No alias Pentatricopeptide repeat-containing protein, putative... 0.14 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 208 252
IPR002885 Pentatricopeptide_repeat 389 437
IPR002885 Pentatricopeptide_repeat 317 344
IPR002885 Pentatricopeptide_repeat 358 387
IPR002885 Pentatricopeptide_repeat 497 524
IPR002885 Pentatricopeptide_repeat 280 304
IPR002885 Pentatricopeptide_repeat 464 489
No external refs found!