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  5. Sopen03g024050

Sopen03g024050


Description : RecF/RecN/SMC N terminal domain


Gene families : OG_42_0005833 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005833_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen03g024050
Cluster HCCA clusters: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
137981 No alias Structural maintenance of chromosomes (SMC) family protein 0.03 Orthogroups_2024-Update
A4A49_06471 No alias structural maintenance of chromosomes protein 2-1 0.03 Orthogroups_2024-Update
Brara.F01757.1 No alias component *(CAP-E2/SMC2) of condensin I/II complex 0.07 Orthogroups_2024-Update
Brara.F02117.1 No alias component *(CAP-E2/SMC2) of condensin I/II complex 0.04 Orthogroups_2024-Update
Cre02.g086650 No alias structural maintenance of chromosomes 2 0.03 Orthogroups_2024-Update
Glyma.12G236600 No alias structural maintenance of chromosomes 2 0.03 Orthogroups_2024-Update
Glyma.13G202100 No alias structural maintenance of chromosomes 2 0.02 Orthogroups_2024-Update
Kfl00001_0690 kfl00001_0690_v1.1 (at5g62410 : 1028.0) SMC2-1 (SMC2); structural... 0.04 Orthogroups_2024-Update
Solyc03g093250 No alias Structural maintenance of chromosomes protein (AHRD V3.3... 0.1 Orthogroups_2024-Update
Solyc03g093260 No alias Structural maintenance of chromosomes protein (AHRD V3.3... 0.11 Orthogroups_2024-Update
evm.model.contig_575.3 No alias (at3g47460 : 681.0) member of SMC subfamily; ATSMC2;... 0.04 Orthogroups_2024-Update
evm.model.tig00000615.55 No alias (at5g62410 : 590.0) SMC2-1 (SMC2); structural... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0005694 chromosome IEA InterProScan predictions
BP GO:0051276 chromosome organization IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR010935 SMC_hinge 518 638
IPR003395 RecF/RecN/SMC_N 3 1161
No external refs found!