Sopen03g024150

Description : RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Gene families : OG_42_0002621 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002621_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen03g024150
Cluster	HCCA clusters: Cluster_158

Target	Alias	Description	ECC score	Gene Family Method
Brara.C01481.1	No alias	pre-mRNA splicing factor *(SF1)	0.03	Orthogroups_2024-Update
Cre12.g553750	No alias	splicing factor-related	0.02	Orthogroups_2024-Update
MA_8238314g0010	No alias	(at5g51300 : 288.0) splicing factor-related; FUNCTIONS...	0.02	Orthogroups_2024-Update
Pp1s87_110V6	No alias	zinc finger	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0003723	RNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR004088	KH_dom_type_1	246	319
IPR000504	RRM_dom	474	543
IPR032570	SF1-HH	116	227

External Links

No external refs found!