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  5. Solyc02g031970

Solyc02g031970


Description : 50S ribosomal protein L7/L12 (AHRD V3.3 *** A0A0B2SQD1_GLYSO)


Gene families : OG_42_0001265 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001265_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc02g031970
Cluster HCCA clusters: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
Brara.K01314.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Potri.015G077200 No alias Ribosomal protein L12/ ATP-dependent Clp protease... 0.03 Orthogroups_2024-Update
Pp1s376_36V6 No alias 50s ribosomal protein l7 0.02 Orthogroups_2024-Update
Sopen02g010230 No alias Ribosomal protein L7/L12 C-terminal domain 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
CC GO:0030014 CCR4-NOT complex IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0070569 uridylyltransferase activity IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
InterPro domains Description Start Stop
IPR013823 Ribosomal_L7/L12_C 148 213
IPR008932 Ribosomal_L7/L12_oligo 85 129
No external refs found!